PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g08080

Common Name

GSCOC_T00032923001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 108aa MW: 12286.3 Da PI: 10.3997

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g08080	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.7	2.3e-27	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl+Wt+ LH++Fv+av+qLGG+ +AtPk i+++m++k +t +h+kS LQkYRl Cc11_g08080 15 FRLKWTKLLHDCFVKAVNQLGGAYEATPKDIVKVMGIKEITTDHIKSYLQKYRL 68 69***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-25	12	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-15	12	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-21	14	70	IPR006447	Myb domain, plants
Pfam	PF00249	9.6E-7	16	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MEAKYGGQVQ GKKKFRLKWT KLLHDCFVKA VNQLGGAYEA TPKDIVKVMG IKEITTDHIK 60 SYLQKYRLSQ EVYGAAYTKA AWSGSRMMLE AIQEKEQRRN LARQMNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-16	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-16	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-16	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-16	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-16	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096744.1	2e-73	uncharacterized protein LOC113716560 isoform X1
Refseq	XP_027096745.1	1e-73	uncharacterized protein LOC113716560 isoform X2
Swissprot	Q9FK47	3e-17	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A068TX64	1e-73	A0A068TX64_COFCA; Uncharacterized protein
STRING	XP_009765181.1	2e-20	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12062	16	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	1e-19	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]