PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g08670
Common NameGSCOC_T00032841001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 232aa    MW: 25552.2 Da    PI: 8.4983
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g08670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.4e-1967121256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Cc11_g08670  67 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEVLAMQLKLKPRQVEVWFQNRRARSK 121
                  78889************************************************98 PP
2HD-ZIP_I/II1171.1e-3767155189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+
  Cc11_g08670  67 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEVLAMQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLQKEVEELRA 155
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1946121IPR009057Homeodomain-like
SuperFamilySSF466893.13E-2049124IPR009057Homeodomain-like
PROSITE profilePS5007117.15163123IPR001356Homeobox domain
SMARTSM003899.2E-1865127IPR001356Homeobox domain
CDDcd000861.79E-1766124No hitNo description
PfamPF000466.4E-1767121IPR001356Homeobox domain
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
SMARTSM003405.5E-21123166IPR003106Leucine zipper, homeobox-associated
PfamPF021834.4E-10123157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAILPNTSTC LELTMSIPGL PSSLSIPSPG EGGGVSMKDL DINQIPSGGE EECMEDDDES  60
PNGGPPRKKL RLTKEQSRLL EESFRQNHTL NPKQKEVLAM QLKLKPRQVE VWFQNRRARS  120
KLKQTEMECE YLKRWFGSLS EQNRRLQKEV EELRAMKVGP PTVLSPHNCE PLPASTLTMC  180
PRCERVTATI AVQQDRAGPT TTTATGTTTS ANPTLSAKVG FVRPRHPSAA C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027152440.11e-136homeobox-leucine zipper protein HOX3
SwissprotQ0JKX18e-83HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-83HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A068TXK61e-169A0A068TXK6_COFCA; Uncharacterized protein
STRINGcassava4.1_022041m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-69homeobox-leucine zipper protein 17