PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g08830

Common Name

GSCOC_T00032821001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 216aa MW: 24086.8 Da PI: 6.5066

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g08830	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed+ l d+++++G g+W+ I++ g+ R++k+c++rw +yl Cc11_g08830 13 KGSWSPQEDQELMDYIQKHGEGHWRNIPKATGLLRCGKSCRLRWVNYL 60 799***************************99**********97 PP
2	Myb_DNA-binding	51.5	2.3e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Cc11_g08830 66 RGNFAEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-24	4	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.32	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	8.78E-30	10	107	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-13	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-15	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	4.53E-11	15	60	No hit	No description
PROSITE profile	PS51294	26.192	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-25	64	115	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-15	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	8.54E-12	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRKPCCDKEG MNKGSWSPQE DQELMDYIQK HGEGHWRNIP KATGLLRCGK SCRLRWVNYL 60 RPDLKRGNFA EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LSKKLASVGI 120 DPKHHRLSHH LARNLINSIA TGETSSALEH HQPFPLDHDQ IKSSSASDHY QASDAGDGIN 180 DDDDSSSLLP DLNVDMASDS SLPSGTATED KMSLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-28	11	115	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-33	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096709.1	1e-158	transcription factor MYB3-like
Swissprot	Q9S9K9	2e-68	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A068TX03	1e-157	A0A068TX03_COFCA; Uncharacterized protein
STRING	VIT_01s0011g04760.t01	8e-89	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-70	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]