PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g09940
Common NameGSCOC_T00032648001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 262aa    MW: 28923.5 Da    PI: 7.0536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g09940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08152199455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  Cc11_g09940 152 SHSLAERMRREKINQKLRCLQDLVPGC----YKSMGMAVMLDVIINYVRSLQ 199
                  8*************************8....355888889999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-16146216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-11146202No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15148210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.008148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-8154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDVVNSLTEI DSFNPNVQEL LSLTAHVGFS DHNRQQSQIP FCFSNDASHN PNANHPHHLQ  60
VPLDFESAAQ FFPQGGVPIS HGCNDSNSSL SEPDYLANSS SRGSASAGIP VNKPKGTYNY  120
GEKKRKRSNG KETEKPKEVV HVRAKRGQAT DSHSLAERMR REKINQKLRC LQDLVPGCYK  180
SMGMAVMLDV IINYVRSLQN QIDFLSMKLS AASLFYDFNS LDMDAVPPTQ ACANFPVPQG  240
LEKMVGEGYG ELPQFHTSWP L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095617.10.0transcription factor bHLH75-like isoform X1
SwissprotA4D9986e-55BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A068TWG70.0A0A068TWG7_COFCA; Uncharacterized protein
STRINGXP_009602728.11e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-57bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]