PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g10040

Common Name

GSCOC_T00032634001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 155aa MW: 17134.3 Da PI: 7.4681

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g10040	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.5e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C++dC+++pyfp ++p++f vh+++Gasnv k+l+++p ++r +a++s+ yeA++r++dPvyG++g+i+ l+qq++ ++ ela+++ Cc11_g10040 5 RCAACKYLRRRCSPDCIFSPYFPPNNPQRFLEVHRIYGASNVAKMLEKAPVNQRAEAANSIHYEAHCRIKDPVYGCAGIITLLNQQINDAQCELAKIQ 102 6**********************************************************************************************999 PP DUF260 99 ee 100 +e Cc11_g10040 103 AE 104 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.349	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-40	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MNSTRCAACK YLRRRCSPDC IFSPYFPPNN PQRFLEVHRI YGASNVAKML EKAPVNQRAE 60 AANSIHYEAH CRIKDPVYGC AGIITLLNQQ INDAQCELAK IQAEIAAHNG HHAGILPPYQ 120 QITDASSFPN YPVEGDGAFP ATHDPSFPQF YLNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-37	6	125	12	131	LOB family transfactor Ramosa2.1
5ly0_B	3e-37	6	125	12	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096315.1	1e-111	LOB domain-containing protein 24-like
Swissprot	P59468	6e-48	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A068TWF7	1e-111	A0A068TWF7_COFCA; Uncharacterized protein
STRING	EOY16304	8e-52	(Theobroma cacao)
STRING	cassava4.1_026224m	8e-52	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-50	LOB domain-containing protein 24