PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g10140

Common Name

GSCOC_T00032617001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 257aa MW: 28327.1 Da PI: 7.0641

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g10140	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.2	8.3e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C +dC+l+p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q+++e Cc11_g10140 4 SCNGCRVLRKGCGEDCTLRPCLqwiktPESQANATVFLAKFYGRAGLVNLINAGPDHLRPEIFRSLLYEACGRIINPIYGSVGLLWSGNWQRCQAAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l ++ Cc11_g10140 102 AVLEGS 107 988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.747	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRMSCNGCRV LRKGCGEDCT LRPCLQWIKT PESQANATVF LAKFYGRAGL VNLINAGPDH 60 LRPEIFRSLL YEACGRIINP IYGSVGLLWS GNWQRCQAAV EAVLEGSPIM QVSTDDAAAG 120 GHPITPLKDC DIRHLSKKSN GIHRVRTRNR FKRSGFKSQV DSVPEFMNET TKFSITGWND 180 DEENDGSEEE LMKRAPSHDS FSVETVEPTL VSRAEQGRVV KSETILVGED DDLVLDLTLG 240 VNPVVRTHLS AGGRRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097963.1	0.0	LOB domain-containing protein 40-like
Swissprot	Q9M886	4e-79	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A068TWE6	0.0	A0A068TWE6_COFCA; Uncharacterized protein
STRING	Migut.E00341.1.p	1e-101	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-79	LOB domain-containing protein 41