PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g10150
Common NameGSCOC_T00032615001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CO-like
Protein Properties Length: 447aa    MW: 49662.4 Da    PI: 5.3165
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g10150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.11e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+++ +k+++++C  ++ +lC++C  + H+       H++v
  Cc11_g10150 16 ARACDNCIRKRARWYCAADDAFLCQNCDASVHSAnplarrHERV 59
                 578*****************************657888888876 PP
2CCT65.51.6e-22389432144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  Cc11_g10150 389 REARVSRYREKRRTRLFCKKIRYEVRKLNAEKRPRMKGRFVKRA 432
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9781461IPR000315B-box-type zinc finger
PfamPF006433.8E-81659IPR000315B-box-type zinc finger
CDDcd000211.51E-91761No hitNo description
PfamPF062034.2E-17389431IPR010402CCT domain
PROSITE profilePS5101715.815389431IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVSDRKLANA MGGKTARACD NCIRKRARWY CAADDAFLCQ NCDASVHSAN PLARRHERVR  60
LKTSSLKPSK ELSLEISVPS WHRGFTKKAR TPRSGKHAKS KSDQEPARSP LHLVPEICSD  120
EIETSHEDNE EQLLYRVPIF DPFVAELRTS ENSNEAATNM GNDGEAADAV GVDESKGTVY  180
DCGNHINQFH GPLPSEMELA EFAADVESLL GKGLDDESFD IEGLGLSDCK EADLVDNNSL  240
GRGRVKVEDE GEAEVAMGNN QIDGEIDMSR GDHEPFELSF DYDSPMTCEE EDNKAGVERA  300
IALKDHLKSE DCKVEDAGIN TNKKILLSLD YEGVISAWAD QRSPWTTGER PELDSNDCWP  360
DCLGTCGTIH NLYGEVGMFG HPAMMDGGRE ARVSRYREKR RTRLFCKKIR YEVRKLNAEK  420
RPRMKGRFVK RATFSAAAAA FPLHTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399415RRTRLFCKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095834.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A068TXH20.0A0A068TXH2_COFCA; Uncharacterized protein
STRINGVIT_01s0011g03520.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-99B-box type zinc finger protein with CCT domain