PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g13150

Common Name

GSCOC_T00032218001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 413aa MW: 44132 Da PI: 7.5034

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g13150	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.9	1e-39	78	201	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Cc11_g13150 78 PKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISAPlirnsylnqnl 175 799*****************************************************************999767777777763333355565566666 PP TCP 89 .........................k 89 Cc11_g13150 176 gisqlrameeshlqqqrrifypgvsL 201 66666544444444444444444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-40	81	253	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.947	83	137	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSMDADNAHL VVNAIRRSNF PLQLLEKRDL HQPSNCSTSI YPTLAIGSNS TTSTTPVDAA 60 ETSGADRPEA AANKKTQPKR TSTKDRHTKV EGRGRRIRMP ATCAARVFQL TKELGHKSDG 120 ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS ISAPLIRNSY LNQNLGISQL 180 RAMEESHLQQ QRRIFYPGVS LSSAENNNSS MSLNFPSESM NVNDMLHAKQ EVRDQAACLD 240 VSDRRIKRRP DEEDLTCLQN HIGNYMVQSS SGSIAASHQG QVQAAAFLMV TNNPSNTSTS 300 QLMRGPDSLW TFPSSMTGTN HNLLHRGGGA SMSSNGLHFM NFPTSMALLP GVHGANNGGG 360 SSGVFEGQSG MIAALNSLRP AVPGGGASEA NLHLGGEEDW HDATTSTTTH HS*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSMDADNAHL VVNAIRRSNF PLQLLEKRDL HQPSNCSTSI YPTLAIGSNS TTSTTPVDAA  60
ETSGADRPEA AANKKTQPKR TSTKDRHTKV EGRGRRIRMP ATCAARVFQL TKELGHKSDG  120
ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS ISAPLIRNSY LNQNLGISQL  180
RAMEESHLQQ QRRIFYPGVS LSSAENNNSS MSLNFPSESM NVNDMLHAKQ EVRDQAACLD  240
VSDRRIKRRP DEEDLTCLQN HIGNYMVQSS SGSIAASHQG QVQAAAFLMV TNNPSNTSTS  300
QLMRGPDSLW TFPSSMTGTN HNLLHRGGGA SMSSNGLHFM NFPTSMALLP GVHGANNGGG  360
SSGVFEGQSG MIAALNSLRP AVPGGGASEA NLHLGGEEDW HDATTSTTTH HS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097019.1	0.0	transcription factor TCP15-like isoform X1
TrEMBL	A0A068TWI9	0.0	A0A068TWI9_COFCA; Uncharacterized protein
STRING	XP_010258392.1	1e-107	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-45	TCP family protein