PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g14670

Common Name

GSCOC_T00032026001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 176aa MW: 19391.6 Da PI: 9.9175

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g14670	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	15	91	8	50
HHHHHHHHHHHHHHHHHCTSCC.C...................................TTS-.STCHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.as................................kapskK.lsKaeiLekAveY 50 Er RR+++++ +++L +ll + as k +++ s a+ + +Av+ Cc11_g14670 15 TERHRRQQMKNLYSKLASLLLPpASevnlplpalldyslthvknlkeriqeleakkeKFKGQIgSSTADFVLQAVKI 91 6*******************995657777777777777777777777776666666555555555556666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.286	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-7	9	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-7	15	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MQAGNLKPRI PRGVTERHRR QQMKNLYSKL ASLLLPPASE VNLPLPALLD YSLTHVKNLK 60 ERIQELEAKK EKFKGQIGSS TADFVLQAVK IIEKGPILEV NLETGLHKRF ILPEVISILE 120 EGGAQVLSAS YATLTDRVLY TISSEASSPR IGIETSRLHE RLKALAGTGC FFCSL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027095620.1	1e-124	transcription factor bHLH168-like
TrEMBL	A0A068TVW9	1e-123	A0A068TVW9_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13045	3	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	9e-25	bHLH family protein