PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g16990
Common NameGSCOC_T00038253001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 449aa    MW: 49373.3 Da    PI: 9.2175
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g16990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40173250178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC+ dls+ak+yhr+hkvC+ hsk+p+v+v+gle+rfCqqCsrfh+l+efDe+krsCrrrL++hn+rrrk+++
  Cc11_g16990 173 RCQVEGCNLDLSSAKDYHRKHKVCDNHSKCPKVVVAGLERRFCQQCSRFHSLTEFDEKKRSCRRRLSDHNARRRKPRQ 250
                  6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.0E-33167235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.804171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.06E-38172253IPR004333Transcription factor, SBP-box
PfamPF031105.4E-31174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEWNTKSDWD NFISFNSKTS DSLKKLQLTD LVIDDEGEID GGSFDLSGIG GTSGGSGSDL  60
GHGSSGKSSK SVSRDSSPKE GMKTSGLKLQ GSPGAIITEI VPPRADLSRT PSSLETSVVS  120
VEPLIGLKLG KRTYFENSAG SSTKSPGFSV APVSSISTAK KTKSSCQNAT IPRCQVEGCN  180
LDLSSAKDYH RKHKVCDNHS KCPKVVVAGL ERRFCQQCSR FHSLTEFDEK KRSCRRRLSD  240
HNARRRKPRQ ETIQFNRMKL TSSYHDGRKQ MNFSLNNGES IGNPTWENVC SSKFTLTQHF  300
PLKREKVGQP PLPRIELPYA MTMHNKLSNE LLTSKASAAD VFKQGFKESV SSSESAAPEF  360
PRALSLLSTN SWGSSEPEPI SFDHPLRVYP TTMPLSVIPQ ALPSEYWQIE TQSSSHTFTG  420
SSNIGGHFQE IQLFKPPYQN DIFSNTWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281742471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229246KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096433.10.0squamosa promoter-binding-like protein 12
RefseqXP_027096434.10.0squamosa promoter-binding-like protein 12
RefseqXP_027096435.10.0squamosa promoter-binding-like protein 12
RefseqXP_027096436.10.0squamosa promoter-binding-like protein 12
RefseqXP_027096437.10.0squamosa promoter-binding-like protein 12
RefseqXP_027096439.10.0squamosa promoter-binding-like protein 12
TrEMBLA0A068V0E10.0A0A068V0E1_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000847341e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-54squamosa promoter binding protein-like 2