PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g17100
Common NameGSCOC_T00038267001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24415.2 Da    PI: 9.1068
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g17100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ie+k  rqvtfskRr g++KKA+ELSvLCd++vav+ifs +gkly+++s
  Cc11_g17100  9 KKIEDKNSRQVTFSKRRSGLMKKAKELSVLCDVDVAVLIFSGRGKLYDFCS 59
                 68***********************************************96 PP
2K-box47.39.1e-17991782199
        K-box  21 lakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++kL +++ +L    +R l   d++ L+l eL qLe+qLe++l + Rs+K++ll+e+i  l + ek+l+eenk L++k++
  Cc11_g17100  99 IRKLLEKNLMLSlFFNRDLEEPDVDHLNLSELVQLEEQLEDALIQTRSRKTRLLMESITSLSEVEKMLREENKLLQNKVA 178
                  67888888888874558999999******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.796161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-31276IPR002100Transcription factor, MADS-box
CDDcd002651.01E-38276No hitNo description
PRINTSPR004048.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.47892183IPR002487Transcription factor, K-box
PfamPF014861.0E-12119177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010221Biological Processnegative regulation of vernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRRKVEIKK IEDKNSRQVT FSKRRSGLMK KAKELSVLCD VDVAVLIFSG RGKLYDFCST  60
NSLAKILQRY HNYAEAEDGP ARISGVEKRN PEGRNVVTIR KLLEKNLMLS LFFNRDLEEP  120
DVDHLNLSEL VQLEEQLEDA LIQTRSRKTR LLMESITSLS EVEKMLREEN KLLQNKVAAG  180
TPNEKRNDLI LEFGDLTHVG MISGQRQAML ELL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-21179178MEF2 CHIMERA
6byy_B6e-21179178MEF2 CHIMERA
6byy_C6e-21179178MEF2 CHIMERA
6byy_D6e-21179178MEF2 CHIMERA
6bz1_A5e-21179178MEF2 CHIMERA
6bz1_B5e-21179178MEF2 CHIMERA
6bz1_C5e-21179178MEF2 CHIMERA
6bz1_D5e-21179178MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2658261e-166GU265826.1 Coffea arabica MADS-box protein FLC subfamily (C11) mRNA, complete cds.
GenBankHQ8453341e-166HQ845334.1 Coffea arabica FLOWERING LOCUS C (FLC) mRNA, complete cds.
GenBankKJ4832431e-166KJ483243.1 Coffea arabica FLC (FLC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097746.11e-143agamous-like MADS-box protein AGL27
TrEMBLA0A068UYN51e-152A0A068UYN5_COFCA; Uncharacterized protein
STRINGXP_009625850.12e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-36AGAMOUS-like 31