PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g17130
Common NameGSCOC_T00038270001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 324aa    MW: 35857.7 Da    PI: 7.9885
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g17130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.45.4e-4025101278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC+adls++++yhrrhkvCe+hska++v++ g+e rfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+qa
  Cc11_g17130  25 CLVDGCNADLSQCRDYHRRHKVCEHHSKASKVTIGGRELRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQA 101
                  **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-331986IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5992299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3723103IPR004333Transcription factor, SBP-box
PfamPF031106.3E-312598IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MESSSLTGSS KRAKAPGNVT QMAHCLVDGC NADLSQCRDY HRRHKVCEHH SKASKVTIGG  60
RELRFCQQCS RFHSLGEFDE GKRSCRKRLD GHNRRRRKPQ AELSRNSGML FPSQQGSSRL  120
LSFGTPQIFP SAVVSSSWSG VVKPENDVVL YCQSNTNYID RQNAFPESVH DYKGVNQFQF  180
IQSTPRTLPE TSICQPLLDP DSASGHNNSS QKIFSDGLNQ VINSDRALSL LSSAPAVTRE  240
IGFSHMVQPD SISQAQSLVH NLQYGSPGQF PYAQEIENKP VISESDSRVS NNATLHFQEM  300
FQNGPEESST SGGSQQTLTF LWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2725981184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18198KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097264.10.0squamosa promoter-binding-like protein 16
RefseqXP_027097265.10.0squamosa promoter-binding-like protein 16
RefseqXP_027097266.10.0squamosa promoter-binding-like protein 16
RefseqXP_027097267.10.0squamosa promoter-binding-like protein 16
RefseqXP_027099756.10.0squamosa promoter-binding-like protein 16
RefseqXP_027099757.10.0squamosa promoter-binding-like protein 16
RefseqXP_027099758.10.0squamosa promoter-binding-like protein 16
TrEMBLA0A068UYH80.0A0A068UYH8_COFCA; Uncharacterized protein
STRINGXP_009621034.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-43SBP family protein