PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000744m
Common NameCICLE_v10000881mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 555aa    MW: 62417.4 Da    PI: 8.3811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000744mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-1416105299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f ++  s++l+  +l lp +f+++++g + +   +tl  +s  +W + l   ++++  ++ kGW  F ++n ++ gD +vF++dg+  f  +v+
  Ciclev10000744m  16 FNIF--SSNLSAECLKLPLQFVRHMEGRTSG--SVTLIGPSWDTWHIDL--IQQDDNLFFDKGWPVFLRDNFIECGDLLVFRYDGELHF--TVQ 101
                      5556..88888888********999988655..6***************..999999**************************996666..9** PP

                      EE-S CS
               B3  96 vfrk 99 
                      +f++
  Ciclev10000744m 102 IFDQ 105
                      9997 PP
2B3444e-14212306198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+ ++++ +v+ s  l +p +f  +h   ++ +++++l +++g sW+v+    +k   ++++ +GW  Fv+ n++k gD+++F+l+++ e  l+
  Ciclev10000744m 212 FVRKMKRFNVSGSYTLNIPYQFSMAHL--PNFKTEVVLHNLKGASWTVNSVPtTKVHTSHTFCGGWLAFVRGNEIKLGDICIFELVHKCE--LH 301
                      666777788899999*******99994..346679**************95557777779999*********************998444..59 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v ++r
  Ciclev10000744m 302 VYILR 306
                      99987 PP
3B348.91.2e-154465251395
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      s  l +p kfa +h   + ++++++l++++g+ W+v+   + k+++ +++ +GW  Fv+ n++k gD+++F+l+++    ++v+
  Ciclev10000744m 446 SYTLKIPYKFAMAHL--PDCKTEIVLRNLKGECWTVNSLPDSKGRMvHTFCGGWMAFVRGNDIKIGDVCIFELISK--LDMRVH 525
                      45699******9996..348899***************7766666679999*********************9974..334444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-1912108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-1413104No hitNo description
PROSITE profilePS5086312.90113106IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1913108IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1115105IPR003340B3 DNA binding domain
SMARTSM010192.2E-1015106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-21207306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-22209307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-18210306No hitNo description
PROSITE profilePS5086312.802212308IPR003340B3 DNA binding domain
PfamPF023622.0E-11212306IPR003340B3 DNA binding domain
SMARTSM010198.0E-12212308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22426527IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-23427528IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-20432526No hitNo description
PROSITE profilePS5086312.548434530IPR003340B3 DNA binding domain
SMARTSM010194.3E-12434530IPR003340B3 DNA binding domain
PfamPF023621.5E-12443525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDNQPGMLYF RRPCFFNIFS SNLSAECLKL PLQFVRHMEG RTSGSVTLIG PSWDTWHIDL  60
IQQDDNLFFD KGWPVFLRDN FIECGDLLVF RYDGELHFTV QIFDQSGCEK EAAFNSKSTS  120
TGQKREREEA VAHSDKALQS LLKKIRECSS SFESDCIDDN RDREADSCEE TRRCLSLSTI  180
FASPSQPKTC NIKPEDEEKK VAQSFISAFP YFVRKMKRFN VSGSYTLNIP YQFSMAHLPN  240
FKTEVVLHNL KGASWTVNSV PTTKVHTSHT FCGGWLAFVR GNEIKLGDIC IFELVHKCEL  300
HVYILRVGKQ YPDSQRGTTV LTGSNVSSTT ISCKQFDGVP KKVKKNSLKK IQLCNVKGSK  360
SCEIKKHIGT DGNSVSIATC CLPKISHEKS EAAAQNRNNV EAKMDSTPGG NLRTMMALDE  420
EKAARSFNSC VPHFVRIMRK FNISGSYTLK IPYKFAMAHL PDCKTEIVLR NLKGECWTVN  480
SLPDSKGRMV HTFCGGWMAF VRGNDIKIGD VCIFELISKL DMRVHITGVG RKEVDLESGK  540
LTSNESSTVD HPLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434882.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_006434883.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_024038867.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_024038868.10.0B3 domain-containing protein Os11g0197600 isoform X1
TrEMBLV4SK700.0V4SK70_9ROSI; Uncharacterized protein
STRINGXP_006434882.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-18B3 family protein