PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001116m
Common NameCICLE_v10001116mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 454aa    MW: 50639.6 Da    PI: 6.3666
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001116mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322.1e-103754121954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e++ LA+++gLt++qV++WF N R +
  Ciclev10001116m 375 FEHflHPYPNDSEKQLLASQTGLTKNQVSNWFINARVR 412
                      554458******************************88 PP
2BELL103.41.6e-33237308172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qel+ ++akL+slleeV+ +Y+ y++q++ v+ss+e++aglg+ak+YtslAl+a+SrhF +L+dai++qi
  Ciclev10001116m 237 EKQELRLRIAKLISLLEEVESKYEIYYNQMEEVVSSYEVIAGLGAAKSYTSLALQAMSRHFCSLRDAIISQI 308
                      689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-32169306IPR006563POX domain
PfamPF075262.7E-38175304IPR006563POX domain
SMARTSM003891.8E-9356420IPR001356Homeobox domain
CDDcd000866.38E-12356417No hitNo description
Gene3DG3DSA:1.10.10.603.6E-27361422IPR009057Homeodomain-like
SuperFamilySSF466892.44E-17362424IPR009057Homeodomain-like
PfamPF059206.1E-17373412IPR008422Homeobox KN domain
PROSITE profilePS5007112.017375416IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVSKDSPPNP ASNMLHQFII SDSITAQNLA NQHFDTYGSA LRGNNILPHS FGVLPSIQSL  60
GERISRSMDL VHVHAPAVAE ESSEISHTRH LMDLLGASNE TNDQSQRLSL SLGSHMLVPS  120
GHYNQSPNYL FYGDEAREVC NPGVDQHVSE GYSFNSNSIN RACSIDGTES FAYAVGNSRF  180
LRPAQSLLEE VVNVGKNIDM SDERYISKLY HGSRRGGLRL SSELKAEMCN TGTLSAEKQE  240
LRLRIAKLIS LLEEVESKYE IYYNQMEEVV SSYEVIAGLG AAKSYTSLAL QAMSRHFCSL  300
RDAIISQINI ASRRFSQDLP KISSGLSQLS LFDREARHHR MSLQQLGMFH SQRQVWRPIR  360
GLPETSVGIL RSWLFEHFLH PYPNDSEKQL LASQTGLTKN QVSNWFINAR VRLWKPMIEE  420
MYREEFADSS EDSNPSFAGS SATREGGADQ AGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-17362423566Homeobox protein Meis2
3k2a_B4e-17362423566Homeobox protein Meis2
4xrs_A4e-17362419158Homeobox protein Meis1
4xrs_B4e-17362419158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435067.10.0BEL1-like homeodomain protein 11 isoform X2
RefseqXP_024040267.10.0BEL1-like homeodomain protein 11 isoform X1
RefseqXP_024040268.10.0BEL1-like homeodomain protein 11 isoform X2
RefseqXP_024040269.10.0BEL1-like homeodomain protein 11 isoform X2
SwissprotQ1PFD11e-103BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLV4T5450.0V4T545_9ROSI; Uncharacterized protein
STRINGXP_006435067.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-106BEL1-like homeodomain 11