PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001142m

Common Name

CICLE_v10001142mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51006.9 Da PI: 6.5477

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001142m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.7	5.7e-27	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +W +++v++Li+a+++++e+ ++++ +kk++W+++sk+m+ergf++sp+qC++k+++lnkrykk++++ +++ +++++++ +++ Ciclev10001142m 122 KWADKMVKLLITAVSYVGEDTSSDCgggarrkfavlQKKGKWKAISKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPSLL 215 7********************9888999999999********************************************669999998887 PP trihelix 83 dql 85 d + Ciclev10001142m 216 DVI 218 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.1E-23	120	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGNLSQGGM IPGGASFGGI DLQGSMRVHH QAQHPHAMHP HHHTINPRQG PSVHPSIHEG 60 FPLTIGTMQS SDQTISMTDY NKGERGKNSF SDDDDPSLTE EGGEGHNDAG KGKKGSPWQR 120 VKWADKMVKL LITAVSYVGE DTSSDCGGGA RRKFAVLQKK GKWKAISKVM AERGFHVSPQ 180 QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPSLLDVIDF LTEKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDLPL QRSLQLALRS RDDHDNDDVR RHIHDPDEDD QDMETDDHDE 300 FEDNHALHGD SRGTYGIAGC SAKRQRQGQG HEDVCLGNSM NPLDFNKSSY PPQVAQADMN 360 QALPESMKSS WLQKQWIESR SLQLEEQKLQ IQVEMLELEK QRFKWQRFSK KRDRELEKLR 420 MENERMKLEN ERMALELKQK EMGADFS*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGNLSQGGM IPGGASFGGI DLQGSMRVHH QAQHPHAMHP HHHTINPRQG PSVHPSIHEG  60
FPLTIGTMQS SDQTISMTDY NKGERGKNSF SDDDDPSLTE EGGEGHNDAG KGKKGSPWQR  120
VKWADKMVKL LITAVSYVGE DTSSDCGGGA RRKFAVLQKK GKWKAISKVM AERGFHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPSLLDVIDF LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDLPL QRSLQLALRS RDDHDNDDVR RHIHDPDEDD QDMETDDHDE  300
FEDNHALHGD SRGTYGIAGC SAKRQRQGQG HEDVCLGNSM NPLDFNKSSY PPQVAQADMN  360
QALPESMKSS WLQKQWIESR SLQLEEQKLQ IQVEMLELEK QRFKWQRFSK KRDRELEKLR  420
MENERMKLEN ERMALELKQK EMGADFS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434454.1	0.0	uncharacterized protein LOC18041979
TrEMBL	A0A067GYJ6	0.0	A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBL	V4V6N5	0.0	V4V6N5_9ROSI; Uncharacterized protein
STRING	XP_006434454.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-169	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Ciclev10001142m
Entrez Gene	18041979