PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001165m
Common NameCICLE_v10001165mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family E2F/DP
Protein Properties Length: 444aa    MW: 49410.9 Da    PI: 6.1568
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001165mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.86.8e-27184249171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++l++++++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  Ciclev10001165m 184 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVL---EV--QKRRIYDITNVLEGIRLIEKTSKNHIRWKG 249
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-28181251IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-17184247IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-34184249IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-24186249IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440746.54E-13261332No hitNo description
PfamPF164212.3E-10265331IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MRLKPSPTQP LSIHLFPPTA VSDSVSSVMT SSSKDPTRPY NHPPQIQFQL LPNHNNMKSS  60
PSTTSLGANR NYHSLLGKIP LSSNQNNTLN VNSNSTDIDI CNKIEDTHSA FSRLELKQTN  120
ELANHAAQNI ARRDKVVNAP SLEPESCASG KSNRKLKGLK STKSGTQGSN ADAPNGLNLS  180
NGCRYDSSLG LLTRKFINLI QEAKDGTLDL NRTAEVLEVQ KRRIYDITNV LEGIRLIEKT  240
SKNHIRWKGS DSLGTSKLDD QVARLKAEIE SLHAEECRID DSIREKQELI RTLEENENHQ  300
KYALFSRMNQ TLIAIKAPQA SYIEVPDPDE HHLHGPFSLS LCLCPDYEND VHSKYQSEGK  360
DITLQQANSA NPSTWNYEPC GVPNFRLSLE HEDNQKRSSD TFSLMSSEAA SGIQKIVPSD  420
CDIDDDYWFG SDPEVSITDL WNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-22184249773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038709.10.0transcription factor E2FC isoform X1
TrEMBLV4SKX80.0V4SKX8_9ROSI; Uncharacterized protein
STRINGXP_006435168.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.13e-82E2F/DP family protein