PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001291m

Common Name

CICLE_v10001291mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 420aa MW: 45165.4 Da PI: 8.0797

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001291m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	3e-05	306	345	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Ciclev10001291m 306 VRKEKLGDRIAALQQLVAPF-----GKTDTASVLLEAIGYIKFLQ 345 67789999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-11	305	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.72E-6	305	349	No hit	No description
SMART	SM00353	0.0023	306	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-9	309	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MESANHQLRQ DQLVGSPSSS SSSLPTPSSC YGVASSSTQN AWTPIPNVTL SSGNFIYNGV 60 ILNSTHKNEI LLPPAANSSM IQESAGLHWI NSQSAHEHFA KIKDEFSDSF PKFTEMSSSP 120 SSNINEDSDL STASYLKNEQ KNLNDLGDKL LLKGAMSSGF PINGNHFPAG DLYSSAHNIS 180 SVGGAMPSRG NFSQIYPSIN ISNLSQISST NSTNFDMNLQ FLDLLASSRV SGDFSQPSHD 240 NLGLYKESLP FGCDQHHLQQ SSRRPSCSPS NKATKRHGGV MEPKATQFAS KKSRLESRAS 300 CPPMKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLLEAIGY IKFLQNQVET LSVPYMKSSR 360 SRPSRTMQGG SIAANGDEEP KRDLRSRGLC LVPLSCMSYV TNDDCGGGIW PPPSFGGGT*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MESANHQLRQ DQLVGSPSSS SSSLPTPSSC YGVASSSTQN AWTPIPNVTL SSGNFIYNGV  60
ILNSTHKNEI LLPPAANSSM IQESAGLHWI NSQSAHEHFA KIKDEFSDSF PKFTEMSSSP  120
SSNINEDSDL STASYLKNEQ KNLNDLGDKL LLKGAMSSGF PINGNHFPAG DLYSSAHNIS  180
SVGGAMPSRG NFSQIYPSIN ISNLSQISST NSTNFDMNLQ FLDLLASSRV SGDFSQPSHD  240
NLGLYKESLP FGCDQHHLQQ SSRRPSCSPS NKATKRHGGV MEPKATQFAS KKSRLESRAS  300
CPPMKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLLEAIGY IKFLQNQVET LSVPYMKSSR  360
SRPSRTMQGG SIAANGDEEP KRDLRSRGLC LVPLSCMSYV TNDDCGGGIW PPPSFGGGT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040378.1	0.0	transcription factor bHLH110
Swissprot	Q9SFZ3	2e-90	BH110_ARATH; Transcription factor bHLH110
TrEMBL	V4T9W8	0.0	V4T9W8_9ROSI; Uncharacterized protein
STRING	XP_006435050.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10001291m
Entrez Gene	18042741

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]