PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001333m
Common NameCICLE_v10001333mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 410aa    MW: 43210.5 Da    PI: 6.445
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001333mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.42.8e-22305367163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+ ++++e+++l +e+
  Ciclev10001333m 305 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 367
                      89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-51136269No hitNo description
Gene3DG3DSA:1.20.5.1707.4E-18298363No hitNo description
PfamPF001703.8E-20305367IPR004827Basic-leucine zipper domain
SMARTSM003386.3E-22305369IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.288307370IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-11308364No hitNo description
CDDcd147027.63E-24310360No hitNo description
PROSITE patternPS000360312327IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGSGEADKQA KEKEAKTPPA ITPQEQIPTT STGAVNPDWS GFQAYSPMPP HGFLASSPQA  60
HPYMWGVQHI MPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMPS PNGIVEASGN  120
TPGSMEADGK PSDAKEKLPI KRSKGSLGSL NMITGKNNDL GKASGASANG AYSKSAESGS  180
EGTSEGSDAN SQNGSQLKSG GGHDSLEGET SQNGSSANDP QNGGASTPHA MVNQSMAIVP  240
MSGPGAPVAV PGPTTNLNIG MDYWGASAAN IPAMRGKVPS TPVAGGIVAG GSRDSVQSQL  300
WLQDERELKR QRRKQSNRES ARRSRLRKQA ECDELAQRAD ALKEENASLR SEVTRIRNEY  360
EQLLAENASL KERLGEIPVQ EDERSVRNDQ HLSNDTQQTG HSDLVQSGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327RRSRLRK
2321328RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.209911e-100fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432686.10.0bZIP transcription factor 16
RefseqXP_006471481.10.0bZIP transcription factor 16
RefseqXP_024039953.10.0bZIP transcription factor 16
RefseqXP_024039954.10.0bZIP transcription factor 16
RefseqXP_024952276.10.0bZIP transcription factor 16
RefseqXP_024952277.10.0bZIP transcription factor 16
SwissprotQ501B21e-170BZP16_ARATH; bZIP transcription factor 16
TrEMBLV4T8M80.0V4T8M8_9ROSI; Uncharacterized protein
STRINGXP_006471481.10.0(Citrus sinensis)
STRINGXP_006432686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-156basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]