PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001472m
Common NameCICLE_v10001116mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 387aa    MW: 43378.5 Da    PI: 6.1537
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001472mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.31.7e-103083451954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e++ LA+++gLt++qV++WF N R +
  Ciclev10001472m 308 FEHflHPYPNDSEKQLLASQTGLTKNQVSNWFINARVR 345
                      554458******************************88 PP
2BELL103.81.2e-33170241172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qel+ ++akL+slleeV+ +Y+ y++q++ v+ss+e++aglg+ak+YtslAl+a+SrhF +L+dai++qi
  Ciclev10001472m 170 EKQELRLRIAKLISLLEEVESKYEIYYNQMEEVVSSYEVIAGLGAAKSYTSLALQAMSRHFCSLRDAIISQI 241
                      689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-32102239IPR006563POX domain
PfamPF075262.0E-38108237IPR006563POX domain
CDDcd000867.35E-12289350No hitNo description
SMARTSM003891.8E-9289353IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27294355IPR009057Homeodomain-like
SuperFamilySSF466891.92E-17295357IPR009057Homeodomain-like
PfamPF059204.9E-17306345IPR008422Homeobox KN domain
PROSITE profilePS5007112.017308349IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDLVHVHAPA VAEESSEISH TRHLMDLLGA SNETNDQSQR LSLSLGSHML VPSGHYNQSP  60
NYLFYGDEAR EVCNPGVDQH VSEGYSFNSN SINRACSIDG TESFAYAVGN SRFLRPAQSL  120
LEEVVNVGKN IDMSDERYIS KLYHGSRRGG LRLSSELKAE MCNTGTLSAE KQELRLRIAK  180
LISLLEEVES KYEIYYNQME EVVSSYEVIA GLGAAKSYTS LALQAMSRHF CSLRDAIISQ  240
INIASRRFSQ DLPKISSGLS QLSLFDREAR HHRMSLQQLG MFHSQRQVWR PIRGLPETSV  300
GILRSWLFEH FLHPYPNDSE KQLLASQTGL TKNQVSNWFI NARVRLWKPM IEEMYREEFA  360
DSSEDSNPSF AGSSATREGG ADQAGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-17295356566Homeobox protein Meis2
3k2a_B2e-17295356566Homeobox protein Meis2
4xrs_A2e-17295352158Homeobox protein Meis1
4xrs_B2e-17295352158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435067.10.0BEL1-like homeodomain protein 11 isoform X2
RefseqXP_024040268.10.0BEL1-like homeodomain protein 11 isoform X2
RefseqXP_024040269.10.0BEL1-like homeodomain protein 11 isoform X2
SwissprotQ1PFD11e-104BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLV4T5450.0V4T545_9ROSI; Uncharacterized protein
TrEMBLV4TF600.0V4TF60_9ROSI; Uncharacterized protein
STRINGXP_006435067.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-107BEL1-like homeodomain 11