PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001636m
Common NameCICLE_v10001636mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 358aa    MW: 38635.8 Da    PI: 9.8272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001636mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.5e-31285342359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh 
  Ciclev10001636m 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPMMLIVTYEGDHNHA 342
                      99************************988****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-17236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.7E-33270342IPR003657WRKY domain
PROSITE profilePS5081130.549278344IPR003657WRKY domain
SuperFamilySSF1182901.83E-26281342IPR003657WRKY domain
SMARTSM007741.7E-37283343IPR003657WRKY domain
PfamPF031061.4E-26285341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAVELMMGYG CGDSFAAAVK MEENAVQEAA SEGMQSIGEF IKLLSRSGQV PSEQKTQYRE  60
STSPSPTNLE PDKEIKVAAE VAVNNFKKVI SLLGRPRTGH ARFRRAPVGS PPPPPPPQKE  120
EKVHLQEPAG PSVQSTNHLS KEQVSAFKVY CPTPVHRLPP LPHQVHKSNP NSTVVTKSDH  180
VPSSINFSAS ATNSFISSLT GTAGDTDSIQ PSFSSGFQFT TPSSAGKPPL SSSSLKRKCN  240
SMDDAALKCG SSSGRCHCSK KRKSRIKRVT RVPAISSKMA DIPPDDYSWR KYGQKPIKGS  300
PHPRGYYKCS SVRGCPARKH VERALDDPMM LIVTYEGDHN HAFAVHDAPA AMVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21270341171WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774345e-79GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434713.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-112WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLV4SJP50.0V4SJP5_9ROSI; Uncharacterized protein
STRINGXP_006434713.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-104WRKY DNA-binding protein 7