PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001641m

Common Name

CICLE_v10001613mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRF

Protein Properties

Length: 358aa MW: 39324.9 Da PI: 9.1647

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001641m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.9	7.5e-23	74	118	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r rsrk++e+ Ciclev10001641m 74 DPEPGRCRRTDGKKWRCSKDAHPNSKYCERHMNRSRYRSRKPVES 118 79****************************************986 PP
2	QLQ	59.2	1.2e-20	13	47	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+++L++Q+l++KyL a++PvPp+Ll++i+ Ciclev10001641m 13 PFTASQWHELEHQALIFKYLKAGLPVPPDLLVPIR 47 9********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.7E-12	12	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.2E-16	13	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.503	13	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.45	74	118	IPR014977	WRC domain
Pfam	PF08879	4.3E-19	75	117	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSGSGSLSSS VAPFTASQWH ELEHQALIFK YLKAGLPVPP DLLVPIRTSL KFLSSSLFHH 60 PTFGYCSYFG KKIDPEPGRC RRTDGKKWRC SKDAHPNSKY CERHMNRSRY RSRKPVESQN 120 TSQSLSTTVG VDIGGNRSSI GSGGGGGGGS RSLSFQNPPL QPLSTREGIC FRSNMSQSQM 180 AAIPYGIPNK EYRLQELKPE GNDGVLSMAS ESLRGFTMNS SVDNSWCVTT SGSSSIPLSD 240 QRSGAFLQNS CLPMQTLQDF DSLIGNGATS KQQQQHYFFG REFDSSRSQK QEHQALQPLP 300 DELPKTIDFG YYLDDQRANK SSLSTTQLSM STPIASSKFF ETSAHSSKDT SMDKFLS*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSGSGSLSSS VAPFTASQWH ELEHQALIFK YLKAGLPVPP DLLVPIRTSL KFLSSSLFHH  60
PTFGYCSYFG KKIDPEPGRC RRTDGKKWRC SKDAHPNSKY CERHMNRSRY RSRKPVESQN  120
TSQSLSTTVG VDIGGNRSSI GSGGGGGGGS RSLSFQNPPL QPLSTREGIC FRSNMSQSQM  180
AAIPYGIPNK EYRLQELKPE GNDGVLSMAS ESLRGFTMNS SVDNSWCVTT SGSSSIPLSD  240
QRSGAFLQNS CLPMQTLQDF DSLIGNGATS KQQQQHYFFG REFDSSRSQK QEHQALQPLP  300
DELPKTIDFG YYLDDQRANK SSLSTTQLSM STPIASSKFF ETSAHSSKDT SMDKFLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432587.1	0.0	growth-regulating factor 4 isoform X2
Refseq	XP_006493632.1	0.0	growth-regulating factor 4-like isoform X2
TrEMBL	V4SYE5	0.0	V4SYE5_9ROSI; Uncharacterized protein
STRING	XP_006493631.1	0.0	(Citrus sinensis)
STRING	XP_006432586.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-37	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Ciclev10001641m
Entrez Gene	18041982