PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001730m
Common NameCICLE_v10001730mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 343aa    MW: 39303.1 Da    PI: 6.1391
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001730mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtfskRrng+ KKA+ELSvLCd++va+i+fs++g++  +s
  Ciclev10001730m  9 KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
                     79*******************************************98776 PP
2K-box23.13.2e-09103173271
            K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                      q++s+   +++++ e+ qqe+ k k++i+n+++ +R +  +  e  +l e+++ eq Le+ lk++R +K+ 
  Ciclev10001730m 103 QATSNPTtNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHL 173
                      5555555699************************77777666666679********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-31278IPR002100Transcription factor, MADS-box
CDDcd002652.44E-38275No hitNo description
PRINTSPR004048.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.6E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRVKVQIKR IENTTNRQVT FSKRRNGLVK KAYELSVLCD VDVALIMFSP SGRVSLFSGN  60
KSMEEILARY VNLPEHERGR LRNQEFLQRA LGKLRSEANQ TYQATSNPTT NTDSHLEEVQ  120
QEIVKCKSQI QNMEKRLRIF EEDPSEMTTL YEIKHREQIL EETLKQVRIR KHLLEENCNS  180
SSTPATSQAH LPPAETSDHM NGFVTESPNN ILEWLPHRDS QVHNLNILDS NGLLPLRDEP  240
QEATEILVPP LNMFRGHNMN IDGQISRRDG LEDDNNDMQR PQFGQVIDVN FSPWTDFYPS  300
GNCPTPAGQT RGRDLLDLYL SQFTPSTILS TPNDQHPTWH FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-18177177MEF2 CHIMERA
6byy_B1e-18177177MEF2 CHIMERA
6byy_C1e-18177177MEF2 CHIMERA
6byy_D1e-18177177MEF2 CHIMERA
6bz1_A2e-18177177MEF2 CHIMERA
6bz1_B2e-18177177MEF2 CHIMERA
6bz1_C2e-18177177MEF2 CHIMERA
6bz1_D2e-18177177MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4753226e-60AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951803.10.0agamous-like MADS-box protein AGL104 isoform X2
TrEMBLV4SGM70.0V4SGM7_9ROSI; Uncharacterized protein
STRINGXP_006433588.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1619969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-54AGAMOUS-like 104