PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001893m

Common Name

CICLE_v10001893mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 316aa MW: 35230.3 Da PI: 8.409

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001893m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.4	8.7e-15	248	290	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k Ciclev10001893m 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 79***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-13	244	308	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.76	246	291	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.2E-13	248	291	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-12	248	291	No hit	No description
CDD	cd14707	3.37E-24	248	293	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-14	248	291	No hit	No description
PROSITE pattern	PS00036	0	251	266	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLMKGMQMMG SQGDGSSNGK QSQFQPLARQ NSMYSLTLDE VQNQLGDLGK PLSSMNLDEL 60 LKNVWTAEVE MEGTTLADQT SLQRQASLSL TSALSKKTVD EVWRDIQQSK NSGEKKPRDR 120 QPTLGEMTLE DFLVKAGVVA EASSDKKSDG PVVGVDQNVV PQFPQQGPWM PYPHPQYQHS 180 QQSMMGVYMP GQPIPQPMNM VTGAVMDVSF PENQVGLTSP SMGTLSDPQL LGRKRGASED 240 MIEKTVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR LEEENERLRK QKVGFLILFM 300 LFCIAVADLV VLLFK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432530.2	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_006471287.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_024039912.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-81	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V4T326	0.0	V4T326_9ROSI; Uncharacterized protein
STRING	XP_006432530.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-72	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Ciclev10001893m
Entrez Gene	18043128

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]