PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002070m
Common NameCICLE_v10001346mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 289aa    MW: 32424.1 Da    PI: 8.7629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002070mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.92.7e-1223892128
              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++s++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Ciclev10002070m   2 IKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 38 
                      56678999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.523159IPR003441NAC domain
SuperFamilySSF1019418.5E-15259IPR003441NAC domain
PfamPF023651.5E-4938IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MIKSENSRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERYQKAE ISLCRVYKRP  60
GVEDHPSLPR SLPTSRASSS RSVSSMSAQS DKRLDPHHHH QFGIERFQAL SGQSSQQQMD  120
IAAEKMSTNT DQTDRSSSCS DVTTVLGLSK QNVYRPNMAS VSSALGLPPS LMEEQAASLT  180
LVPNCTTTLF PVALSTSSSS AASSNATDEF HRLLAYQQAS MNHQQQYYNY QHHHQQQQHH  240
SHFPQLPPQS QPLSVNMLPS PLPAAFSDRL WEWNPIPEAN REYNDPFK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431380.10.0NAC domain-containing protein 35
TrEMBLV4T5200.0V4T520_9ROSI; Uncharacterized protein
STRINGXP_006431380.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-36NAC domain containing protein 35