PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002205m

Common Name

CICLE_v10002205mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 261aa MW: 28908.2 Da PI: 7.5729

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002205m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	57	104	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riNs +++Lr+llP+ K +Ka+ L ++v+++k+L Ciclev10002205m 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-----IKTDKASLLAEVVHHVKEL 104 789***********************8.....69*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.16E-13	54	107	No hit	No description
PROSITE profile	PS50888	15.72	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-11	57	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-13	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-12	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.2E-5	160	226	No hit	No description
CDD	cd04873	0.0012	163	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFPFQSHHGS YQNYWSHQNG FVQEPNWPGT LINGEGSIMS STSSASKVEK KSTSDACKSH 60 KEAERRRRQR INSHLSTLRT LLPNTIKTDK ASLLAEVVHH VKELRSQATD VAERDWNSCW 120 SSSSGSEEES WPFPGETDEL TLTPYSDNGI EERRQEQQLI KATLCCEDRP GLNRELTRAI 180 SLVRARAVRA EMTTVGGRTK TVVVIEWVGG GGGNEEMAVL QRALKDVVEN RASGYGLGRI 240 GSGIKRARVG GLVDECDHRD *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433837.1	0.0	putative transcription factor bHLH107
TrEMBL	V4T1Q8	0.0	V4T1Q8_9ROSI; Uncharacterized protein
STRING	XP_006433837.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18858	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002205m
Entrez Gene	18040845