PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002224m
Common NameCICLE_v10002083mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 258aa    MW: 27868 Da    PI: 5.3968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002224mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13189234655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + a++Le+AveY+k Lq
  Ciclev10002224m 189 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ 234
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16186241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-13187238No hitNo description
Gene3DG3DSA:4.10.280.107.0E-16188241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-13189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQPTAGGSSS SSGGGGGGVG GRGELSRGGL ARLRSAPASW IDALLEEELE DPLKPNQCLT  60
QLLSSGNPVS VTAGLSLSQS QLDQVGFQRQ NSSPADLFDG YFSNYATPSS YDYVDVSPNS  120
NKRAREDNNA QFPSPTAKLN FHSHLKVEQS GQVPGGVSNL VDMDMEKLLE DSVPCRVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQDLV PNMDKQTNTA DMLEEAVEYV KFLQKQIEVL  240
HFLENSPFGG SETGIEL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434678.11e-176transcription factor bHLH81 isoform X2
SwissprotQ9C8P82e-75BH080_ARATH; Transcription factor bHLH80
TrEMBLV4V7490.0V4V749_9ROSI; Uncharacterized protein
STRINGXP_006473253.11e-174(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-60bHLH family protein