PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002237m

Common Name

CICLE_v10002237mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 255aa MW: 26693.6 Da PI: 7.6401

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002237m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.3e-38	26	84	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprC+st tkfCyynny+lsqPr+fCk+CrryWt+GG+lrn+PvGgg+rkn k+ Ciclev10002237m 26 TESLPCPRCESTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNIPVGGGTRKNSKR 84 67899***************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-21	27	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.4E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MPSESTDRKL ARAHNPISTY PPPKVTESLP CPRCESTSTK FCYYNNYNLS QPRHFCKSCR 60 RYWTQGGTLR NIPVGGGTRK NSKRTRISSS SSSGAVVATA NSSSCSSAVT HDRVAEPANP 120 VSVLPCGNPE MGLITMTDVN LNDSVGVPGS GSFTTMLNMQ IQGQNFLGLG GFHNHGYGIG 180 SGLEELELGF GTARSWDIPG TGYACTGGGS GAATSGCNTW QMMNGDDQGG NDVGEDCFGW 240 SGLAISTPAG KDLK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434546	3e-39	AM434546.2 Vitis vinifera contig VV78X101338.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434874.1	0.0	dof zinc finger protein DOF1.6
TrEMBL	V4V7M1	0.0	V4V7M1_9ROSI; Uncharacterized protein
STRING	XP_006434874.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	2e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002237m
Entrez Gene	18042611