PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002239m
Common NameCICLE_v10002239mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 255aa    MW: 28053.9 Da    PI: 8.651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002239mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-183883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G+++W++I+r++  gR++k+c++rw + 
  Ciclev10002239m 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 83
                     79*****************************9.***********985 PP
2Myb_DNA-binding521.7e-1692134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Ciclev10002239m  92 PFSPAEDDTILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 134
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.4293388IPR017930Myb domain
SuperFamilySSF466891.33E-3135131IPR009057Homeodomain-like
SMARTSM007177.2E-173786IPR001005SANT/Myb domain
PfamPF002499.1E-183883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-243991IPR009057Homeodomain-like
CDDcd001671.23E-154082No hitNo description
SMARTSM007173.6E-1489137IPR001005SANT/Myb domain
PROSITE profilePS5129419.46489139IPR017930Myb domain
CDDcd001674.44E-1192135No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2292138IPR009057Homeodomain-like
PfamPF002497.0E-1492134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEACSYSSTS SSESSSSESS LSGNNKTRRA THKPERIKGP WSAEEDRILT RLVERYGPRN  60
WSLISRYIKG RSGKSCRLRW CNQLSPSVAH RPFSPAEDDT ILAAHARFGN RWATIARLLP  120
GRTDNAVKNH WNSTLKRRTR EHPVQMQPHQ QQQLMDSVDN GGDNNNDNEN IGLGGFAVSG  180
SHHQQQQCMG LEDDALTALT LGPPGGSSSI NINDSSAERT ESLPAGFWDA MRGVIAREVR  240
DYMSSTLSGT SGFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-423413954159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-423413954159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434842.10.0transcription factor MYB77
RefseqXP_006473375.10.0transcription factor MYB77
TrEMBLA0A067H9B10.0A0A067H9B1_CITSI; Uncharacterized protein
TrEMBLA0A2H5NGY90.0A0A2H5NGY9_CITUN; Uncharacterized protein
TrEMBLV4T4G70.0V4T4G7_9ROSI; Uncharacterized protein
STRINGXP_006473375.10.0(Citrus sinensis)
STRINGXP_006434842.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-57myb domain protein 77