PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002269m
Common NameCICLE_v10002029mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 251aa    MW: 27115.7 Da    PI: 4.6001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002269mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.21.8e-13201244447
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                       +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+e  +L  
  Ciclev10002269m 201 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEKARLLR 244
                      689************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-6198249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.415200245IPR004827Basic-leucine zipper domain
PfamPF001701.6E-11200244IPR004827Basic-leucine zipper domain
CDDcd147073.93E-19202244No hitNo description
SuperFamilySSF579595.19E-10202245No hitNo description
Gene3DG3DSA:1.20.5.1709.0E-13203245No hitNo description
PROSITE patternPS000360205220IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMASSKVMAT ASTTNTDLPC QQQPSSICPS SLSSMLADDP PNCLGSMNMD DLLKNIYATP  60
TPDQLALGSG ASIPRDVNDT GSANDNSGTN NNNNNNSSND DNNKSVDEVW KQIVAGGSDQ  120
RRAGAADEEM TLEDFLTKAG AVREEDVRPY GNNNNNNNNN INNINSNNNN QLVVVGPGGG  180
GGGGRGKRRI VEEPPMDKAT QQKQRRMIKN RESAARSRER KQAYTVELES LVTQLEEEKA  240
RLLREEVFIL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.41500.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432283.11e-178G-box-binding factor 4 isoform X1
RefseqXP_006432285.11e-178G-box-binding factor 4 isoform X2
TrEMBLV4SXH00.0V4SXH0_9ROSI; Uncharacterized protein
STRINGXP_006432284.11e-177(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.15e-18G-box binding factor 4