PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002280m
Common NameCICLE_v10002280mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 249aa    MW: 27215.5 Da    PI: 7.4335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002280mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-194089255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Ciclev10002280m 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 89
                     69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.03E-223999No hitNo description
SMARTSM003803.5E-3740103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-304098IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-214097IPR016177DNA-binding domain
PROSITE profilePS5103222.6294097IPR001471AP2/ERF domain
PfamPF008473.4E-144089IPR001471AP2/ERF domain
PRINTSPR003677.4E-104152IPR001471AP2/ERF domain
PRINTSPR003677.4E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSKALMGGIG EKKQLKKPAQ ASSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSHEAAMAY DAAARKLYGP DAKLNLPELP SAQSHHLPAS SVNCTQHVAQ  120
RRNQPQMIHN SGITCSSNSP LPRSSNNDAT QVYNFNYNNS AMSFLDNGSV GSHGKLAENE  180
VKFSLNEQET DGFWENLNVN SPVFDESIWA EAAMSVDYPV MGEQGLLNAN FVDASCCGWD  240
MLPTPWCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-174197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435084.10.0dehydration-responsive element-binding protein 2D
TrEMBLV4V8720.0V4V872_9ROSI; Uncharacterized protein
STRINGXP_006435084.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-50ERF family protein