PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002314m
Common NameCICLE_v10002314mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 242aa    MW: 27325.7 Da    PI: 10.352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002314mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-17128217198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp  f++++  +k ++  +tl de+g ++   +    ++ +  l++GWk F+ a+gL +gD +vF+l++++ f  +v
  Ciclev10002314m 128 FIKPMLQSHVTGGFWLGLPGYFCRRNL-PK-RDEAITLIDEDGDEYPTVY--LPRKTG--LSGGWKAFAVAHGLVDGDALVFQLIRNTAF--KV 213
                      89*********************9994.33.5568***************..555544..*************************99999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Ciclev10002314m 214 YIIR 217
                      8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-24122220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-21122219IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-27126217No hitNo description
SMARTSM010191.8E-22128219IPR003340B3 DNA binding domain
PfamPF023621.9E-15128217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407128219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVKAKPSYEE CRLKRVEENK KRMEALNLPM LCQALRKKPS IEPSHEKQVK PRTVKKQEDV  60
VLRRSSRVAN KPAPVYNGVT LVRVEIPRRI SSKRDLSNRV YASDEARAGA VEKAEKLEAR  120
LGPEHPTFIK PMLQSHVTGG FWLGLPGYFC RRNLPKRDEA ITLIDEDGDE YPTVYLPRKT  180
GLSGGWKAFA VAHGLVDGDA LVFQLIRNTA FKVYIIRVNG SDQMKNLLNS KYQISEPVQS  240
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434799.11e-179B3 domain-containing protein At5g42700 isoform X1
SwissprotQ69V366e-70Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLV4V7F61e-178V4V7F6_9ROSI; Uncharacterized protein
STRINGXP_006434799.11e-179(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]