PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002382m

Common Name

CICLE_v10002156mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 228aa MW: 27396.6 Da PI: 7.4294

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002382m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4e-20	15	85	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W ++e+++Li +r e+e++l k++k+ We vs k+rerg++r+p qCk+kw+nl +ryk+ k+ ++ + Ciclev10002382m 15 QWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKAKKRFKRLN 85 7**************************************************************99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-17	14	80	No hit	No description
CDD	cd12203	3.84E-17	15	79	No hit	No description
PROSITE profile	PS50090	7.073	16	72	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMTSSSSSAH AQAVQWGNEE TRDLIVIRGE TERDLVGIKR NKTIWEIVSV KLRERGYSRT 60 PDQCKCKWKN LVNRYKAKKR FKRLNADELS DEEDDDEEQS EEEEEEEERP ARGNSRKRKI 120 ERNVSDKSPR ATSGTAGIHE MLKAFFDQQQ RMEVEWRQMM ERRAQERQLF EEEWRQRMEK 180 LERERLLVEQ AWREKEEQRR IREESRAERR DALLTTLLTK LINQNNP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432827.1	1e-123	trihelix transcription factor GT-3b
Refseq	XP_006471559.1	1e-123	trihelix transcription factor GT-3b
TrEMBL	V4SEL7	1e-161	V4SEL7_9ROSI; Uncharacterized protein
STRING	XP_006471559.1	1e-123	(Citrus sinensis)
STRING	XP_006432827.1	1e-123	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-20	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002382m
Entrez Gene	18042071