PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002410m
Common NameCICLE_v10002410mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25873.6 Da    PI: 10.0873
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002410mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.4e-28958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien +nrqvtfskRrng++KKA+EL vLCda+v++i+ sstgk++ey 
  Ciclev10002410m  9 KRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYV 58
                     79***********************************************7 PP
2K-box74.33.4e-2571166196
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      yq++ + +l+++++e++q++l++Lk+ + nL++e+R++lGe+L++Lslk L  Leq++++ l+ iR++K + +  qi + +kk ++ +een++L
  Ciclev10002410m  71 YQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHKKKVRREEEENRKL 164
                      56666778************************************************************************************** PP

            K-box  95 rk 96 
                      r+
  Ciclev10002410m 165 RN 166
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.712161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.61E-34272No hitNo description
PRINTSPR004042.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-34395IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1782166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.27384176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MARGKIQIKR IENATNRQVT FSKRRNGLFK KAQELTVLCD AKVSIIMCSS TGKVQEYVSS  60
STTTKQLLDE YQRRLKIDLW SSQYEKMQEN LKNLKEVNIN LKKEIRQRLG ESLNDLSLKK  120
LSDLEQDVDN CLRIIRERKL RAISGQIVTH KKKVRREEEE NRKLRNGFII NAKEEDQHYE  180
LVDNEGHYDS VIRFQNGGPG IFALRLQPNE PLSSQWMSIH E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-15160160MEF2C
5f28_B6e-15160160MEF2C
5f28_C6e-15160160MEF2C
5f28_D6e-15160160MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435093.21e-162floral homeotic protein DEFICIENS
SwissprotE0CPH45e-94AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A2H5NSB81e-160A0A2H5NSB8_CITUN; Uncharacterized protein
TrEMBLV4SKQ61e-160V4SKQ6_9ROSI; Uncharacterized protein
STRINGXP_006435093.11e-161(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2283834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]