PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002438m

Common Name

CICLE_v10002438mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WOX

Protein Properties

Length: 218aa MW: 24859.1 Da PI: 9.5079

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002438m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	80	139	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Ciclev10002438m 80 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 139 7***************99************************************97 PP
2	Wus_type_Homeobox	118.6	2.8e-38	80	141	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Ciclev10002438m 80 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.187	75	140	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-13	75	145	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-7	77	144	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-19	80	139	IPR001356	Homeobox domain
CDD	cd00086	3.65E-5	80	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.4E-8	81	139	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGSMKVHQLA RGFWEHAEPS LTLGCKRLRP LAPKLPNAES TSVSSFDLKS FIRPESGPRK 60 LVSSDEKRNP PQVETHPGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ ITAQLGKYGK 120 IEGKNVFYWF QNHKARERQK QKRNSLGLSH CPRTPAATAS FTTTISLDSR EREEESSPYK 180 RKCMNWTFEC LEEESRSCKE DQGDRTLELF PLHPEGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434726.1	1e-162	WUSCHEL-related homeobox 4
Refseq	XP_006473292.1	1e-162	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	8e-79	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2H5NHA0	1e-160	A0A2H5NHA0_CITUN; Uncharacterized protein
TrEMBL	V4TE66	1e-160	V4TE66_9ROSI; Uncharacterized protein
STRING	XP_006473292.1	1e-161	(Citrus sinensis)
STRING	XP_006434726.1	1e-161	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	9e-80	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Ciclev10002438m
Entrez Gene	18041160

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]