PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002736m

Common Name

CICLE_v10002739mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 162aa MW: 17699.9 Da PI: 9.8829

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002736m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	82.2	1.3e-25	3	61	7	65
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa 65 +C+dCGn+ak++C+++RCRtCCk+r fdC+thv+stWvpaakrr++++ + ss++ + Ciclev10002736m 3 ACRDCGNRAKRECSFRRCRTCCKTRRFDCTTHVRSTWVPAAKRRQKKKLITGGSSSSLS 61 7********************************************99888776665544 PP
2	DUF702	70.4	5.7e-22	59	129	86	154
DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgee...elaYqtavsigGhvfkGiLydqGlee 154 + s + ++a+ + e+ ++slP +v+++avfrc++v++v+dg++ e++Y ++v+i+GhvfkG+Lyd G++e Ciclev10002736m 59 SLSFS-TTASCQDESFKKSLPGKVQAPAVFRCIKVTAVSDGDDnkaEVGYVATVNISGHVFKGFLYDLGIDE 129 22222.2333444555677*****************88654222799******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-40	3	128	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-23	4	45	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.2E-24	77	127	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MRACRDCGNR AKRECSFRRC RTCCKTRRFD CTTHVRSTWV PAAKRRQKKK LITGGSSSSL 60 SFSTTASCQD ESFKKSLPGK VQAPAVFRCI KVTAVSDGDD NKAEVGYVAT VNISGHVFKG 120 FLYDLGIDEK KLFPWDSSGR ENKESSPPNV DSSNADATSG N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432447.2	1e-115	protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	3e-46	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A067EUM3	1e-114	A0A067EUM3_CITSI; Uncharacterized protein
TrEMBL	V4T828	1e-114	V4T828_9ROSI; Uncharacterized protein
STRING	XP_006432446.1	1e-115	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-32	SHI-related sequence 6

Link Out ? help Back to Top
Phytozome	Ciclev10002736m
Entrez Gene	18041690

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]