PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002805m
Common NameCICLE_v10002805mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 141aa    MW: 16451.4 Da    PI: 6.8014
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002805mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-1153107559
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                      ++ rr+++NRe+ArrsR RKk+++e L+e+      eN+ Lk+el+   ++++ l
  Ciclev10002805m  53 RKKRRMISNRESARRSRWRKKKQLEDLTEELNRSAVENQVLKNELNIVLNQCYLL 107
                      68899*****************************************999999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-948104No hitNo description
SMARTSM003389.8E-1249113IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.12851114IPR004827Basic-leucine zipper domain
PfamPF001708.0E-953108IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-1153108No hitNo description
CDDcd147021.83E-1354104No hitNo description
PROSITE patternPS0003605671IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MFLGEEAAAQ FQLPVLETRF TADDIQEWLS DLFQSNSGSS EGSTRAVYSD DERKKRRMIS  60
NRESARRSRW RKKKQLEDLT EELNRSAVEN QVLKNELNIV LNQCYLLWRE NEQLTSEYVA  120
LRTRLSNLYR ILGSMQTPSQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15473KRRMISNRESARRSRWRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433663.16e-98basic leucine zipper 4
TrEMBLA0A2H5P6M11e-96A0A2H5P6M1_CITUN; Uncharacterized protein
TrEMBLV4SGV01e-96V4SGV0_9ROSI; Uncharacterized protein
STRINGXP_006433663.12e-97(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122322432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-22basic leucine-zipper 5