PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002972m
Common NameCICLE_v10002972mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 91aa    MW: 10182.6 Da    PI: 8.7101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002972mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.7e-122890169
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69
                     f+k +++s+v +  +l lp++f++++  +k + ++++lede+gr++e  +i  kk+    l++GW+ F+
  Ciclev10002972m 28 FIKSMVRSHVYSCFWLGLPNQFCKQNL-PK-TVTEMVLEDENGREFEAVYIGPKKG----LSGGWRAFA 90
                     89*********************9994.33.3459***************655555....9******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-111990IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-132290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-162690No hitNo description
PROSITE profilePS508639.0932890IPR003340B3 DNA binding domain
PfamPF023624.4E-102890IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASYEERARA LKSAEQLQSS LQSGYPSFIK SMVRSHVYSC FWLGLPNQFC KQNLPKTVTE  60
MVLEDENGRE FEAVYIGPKK GLSGGWRAFA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432042.21e-62putative B3 domain-containing protein At5g58280
RefseqXP_015384133.11e-62putative B3 domain-containing protein At5g58280 isoform X1
RefseqXP_024950699.11e-62putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ5KQI41e-36Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A067EVH86e-60A0A067EVH8_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4SWW15e-61V4SWW1_9ROSI; Uncharacterized protein
STRINGXP_006464978.14e-59(Citrus sinensis)
STRINGXP_006432042.19e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]