PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003110m
Common NameCICLE_v10003110mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 122aa    MW: 14178 Da    PI: 5.1892
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003110mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.6e-1182103526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++++rtG C++G +CkF+H+
  Ciclev10003110m  82 DCSYYLRTGRCRFGMSCKFNHP 103
                      6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.80777105IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-477104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-679105IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-882103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-583102IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MHKLLLENIV LWGNNNLVFR LKLVNFQETT NLDIEDPEDQ VDSDTEEEVE NVDKNNKQVD  60
EITGNQMTRR KFCYPQRPGV HDCSYYLRTG RCRFGMSCKF NHPVPRQIQV SFGFCDTLFS  120
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040723.11e-64zinc finger CCCH domain-containing protein 43
TrEMBLV4SVX75e-86V4SVX7_9ROSI; Uncharacterized protein
STRINGXP_006431697.19e-87(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2124855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.14e-15C3H family protein