PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003273m
Common NameCICLE_v10003273mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 242aa    MW: 27157.8 Da    PI: 7.2469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003273mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.33e-2391323128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +G+rF+Pt+eel+++ L k+++g+ l+    i+e+++y    Pw++  + +++++k  wy F++ +k+   +kr +r++ +g+W+   + ke++
  Ciclev10003273m   9 VGVRFKPTEEELIKFCLLKRAKGQVLSP-CPIAECELYGKrSPWEIFdEGANNSDKsIWYCFTSLKKA--GKKRISRVAGKGTWHGESSAKEIV 99 
                      7***********************9887.56****9995549****6444444333378888887665..578********************* PP

              NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++  k+ ++g kkt+ f      kg+k+dW m+e+rl
  Ciclev10003273m 100 DSkkKNVVIGFKKTFKFR----IKGKKSDWNMDEFRL 132
                      985455569********7....7899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-275149IPR003441NAC domain
PROSITE profilePS5100527.9337149IPR003441NAC domain
PfamPF023654.9E-179132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEARFHLGVG VRFKPTEEEL IKFCLLKRAK GQVLSPCPIA ECELYGKRSP WEIFDEGANN  60
SDKSIWYCFT SLKKAGKKRI SRVAGKGTWH GESSAKEIVD SKKKNVVIGF KKTFKFRIKG  120
KKSDWNMDEF RLADDEESNN YVLCKIKKKK PKAAEEEEVE EAASEVATTN TMNNFAAESH  180
QSCSQMFIPP SSISACDNIN GGEQCYGMEN LPNQVEIINS NGLRPPISEA TQKVTNITDD  240
DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14215010169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432683.20.0NAC domain-containing protein 2
RefseqXP_015383719.10.0NAC domain-containing protein 2-like
TrEMBLV4SE771e-179V4SE77_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006432683.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.18e-16NAC domain containing protein 102