PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003379m
Common NameCICLE_v10003379mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 201aa    MW: 22844.9 Da    PI: 4.6927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003379mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1041.9e-3281261128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGf+F Ptdeelv ++L +k++  +++  ++i+e++   ++Pw+L+ ++  + ++wyfFs+ +         +r+t +gyWk+   +++v++
  Ciclev10003379m   8 LPPGFKFLPTDEELVLHFLYPKASLLPCHP-NIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIED--------KRVTGNGYWKQLDFEEPVIN 92 
                      79*************************999.89**************976667899******9866........599***************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + g+++g+kk +vf  g+ap g++t+W+m+ey+l
  Ciclev10003379m  93 SAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHL 126
                      ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-426157IPR003441NAC domain
PROSITE profilePS5100537.4578158IPR003441NAC domain
PfamPF023654.4E-219126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MCDRTINLPP GFKFLPTDEE LVLHFLYPKA SLLPCHPNII PELNPQLHDP WQLNGRALCS  60
GNRWYFFSQI EDKRVTGNGY WKQLDFEEPV INSAGKKIGM KKYFVFCVGE APLGVETNWI  120
MQEYHLCSCG ASANKSYKRR GNRILGCCKW VLCRVYEEDG NSKGFCHGDD DDDDNGTELS  180
CLDEMFLSLD DDLTDVSFPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-33616318173NAC domain-containing protein 19
3swm_B8e-33616318173NAC domain-containing protein 19
3swm_C8e-33616318173NAC domain-containing protein 19
3swm_D8e-33616318173NAC domain-containing protein 19
3swp_A8e-33616318173NAC domain-containing protein 19
3swp_B8e-33616318173NAC domain-containing protein 19
3swp_C8e-33616318173NAC domain-containing protein 19
3swp_D8e-33616318173NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465058.11e-149NAC domain-containing protein 104-like isoform X3
SwissprotQ8GWK63e-58NC104_ARATH; NAC domain-containing protein 104
TrEMBLV4SCU41e-148V4SCU4_9ROSI; Uncharacterized protein
STRINGXP_006432173.11e-148(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-58xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]