PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003620m
Common NameCICLE_v10003620mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 93aa    MW: 10577.8 Da    PI: 9.1212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003620mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-091660344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+e  +++ +a + + ++   +W  +ar +g g+++ ++k ++
  Ciclev10003620m 16 TWTPEQNKKFERALAVYDKDtpdRWQNVARAVGGGKSPDDVKRHY 60
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.097964IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-41064IPR009057Homeodomain-like
SMARTSM007172.9E-81366IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-131572IPR009057Homeodomain-like
PfamPF002493.7E-71660IPR001005SANT/Myb domain
CDDcd001678.80E-61664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASSSIASSR RVDQSTWTPE QNKKFERALA VYDKDTPDRW QNVARAVGGG KSPDDVKRHY  60
DRLVEDLIFI ESAQFPLPNY KNTGKQLHWH SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-28887280RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435008.19e-65protein RADIALIS-like 6
SwissprotQ1A1738e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H5NSE32e-63A0A2H5NSE3_CITUN; Uncharacterized protein
TrEMBLV4SKI72e-63V4SKI7_9ROSI; Uncharacterized protein
STRINGXP_006435008.14e-64(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-33RAD-like 6