PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003698m
Common NameCICLE_v10003698mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 170aa    MW: 18148 Da    PI: 10.7271
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003698mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.8e-201145135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp g+k+LCnaCG+++rkk++
  Ciclev10003698m 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
                     ********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-15562IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14648No hitNo description
Gene3DG3DSA:3.30.50.102.8E-161045IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034401136IPR000679Zinc finger, GATA-type
PfamPF003208.9E-181145IPR000679Zinc finger, GATA-type
CDDcd002021.80E-121145No hitNo description
PROSITE profilePS5011412.2951141IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MNQNDSNLKY CTDCKTTKTP LWRGGPAGPK SLCNACGIRF RKKKRVFEGL KKRSDKKKDK  60
TINAAAAASA SASAKVVAEK ADGTGNASCC VNGLGDSFKM RLMALGQEVL LQRSSPSSSS  120
PSTTSKSSPS LFLPSVVAKK QRCQRKRKLK EEEQAAFSLM ALSCGFVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433498.11e-119GATA transcription factor 15
TrEMBLV4SGG01e-118V4SGG0_9ROSI; Uncharacterized protein
STRINGXP_006433498.11e-119(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-20GATA transcription factor 15