PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003726m
Common NameCICLE_v10003726mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 90aa    MW: 10141.3 Da    PI: 5.1489
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003726mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09752346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ +
  Ciclev10003726m  7 TWTAKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYEM 52
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.27358IPR017884SANT domain
SMARTSM007172.5E-7456IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-5660IPR009057Homeodomain-like
PfamPF002494.0E-6753IPR001005SANT/Myb domain
CDDcd001673.91E-7753No hitNo description
SuperFamilySSF466891.87E-12861IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASGSSTWTA KQNKLFENAL AIYDKDTPDR WHNLARAVGG KTVEEVKRHY EMLAEDVSRI  60
EAGEIPLPDY KKIGGTNKAP SYINMDNEEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-308781181RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434998.21e-62protein RADIALIS-like 3 isoform X1
RefseqXP_024038926.11e-62protein RADIALIS-like 3 isoform X2
SwissprotQ1A1738e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLV4SKI05e-61V4SKI0_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006434998.19e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-36RAD-like 6