PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003771m
Common NameCICLE_v10003771mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 177aa    MW: 19944.6 Da    PI: 8.4842
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003771mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18111145135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+C t +Tp+WR gp g+ktLCnaCG++y++ +l
  Ciclev10003771m 111 CSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL 145
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-13105155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-14108167No hitNo description
PROSITE profilePS5011411.372109141IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14109143IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.57E-14110167No hitNo description
PfamPF003202.4E-16111145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAENIFTFDD EGDFSYSDSC SYTSSPLCVP QDPIDEIELY PNFLNDSISI SNLDVSNFSS  60
EFETPMMKKQ AAAAAQGCNG FLGNKKPRGK REGRRGMWSM SMNEELWQRK CSHCETRHTP  120
QWRVGPLGPK TLCNACGVRY KSGRLLPEYR PAASPTFDVH IHSNFHRKIL KKKKGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432141.11e-132GATA transcription factor 7
RefseqXP_015384390.11e-132GATA transcription factor 7-like
TrEMBLV4T7461e-131V4T746_9ROSI; Uncharacterized protein
STRINGXP_006432141.11e-131(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.22e-33GATA transcription factor 3