PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003903m
Common NameCICLE_v10003903mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 224aa    MW: 23986.8 Da    PI: 10.3597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003903mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Ciclev10003903m 123 HFRGVRQRP-WGKWAAEIRDPK----KaARIWLGTFDTAEAAALAYDEAALRFKG 172
                      58*******.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-21123181No hitNo description
SMARTSM003803.0E-38123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32123181IPR001471AP2/ERF domain
PfamPF008479.6E-14123172IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22123181IPR016177DNA-binding domain
PROSITE profilePS5103224.816123180IPR001471AP2/ERF domain
PRINTSPR003673.5E-11124135IPR001471AP2/ERF domain
PRINTSPR003673.5E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPSSLQCSTT AEGRSAPSML VGTSAPLNQS VSSPMNLPQC SGMDPNSSTS SLVSQYSGAQ  60
PQLENQYKRL RRESPSTIAY TPQTPASDNL SRSSLATQYG PGVAHIGGQT QFGLLAGNVS  120
RMHFRGVRQR PWGKWAAEIR DPKKAARIWL GTFDTAEAAA LAYDEAALRF KGRKAKLNFP  180
ERQPNYGIPS GLYGKYRYLP VTFPTTSSSS SLSSSSATSS QQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24123182262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471819.11e-122sodium channel and clathrin linker 1-like isoform X2
RefseqXP_024039696.11e-122sodium channel and clathrin linker 1
TrEMBLV4V3D91e-161V4V3D9_9ROSI; Uncharacterized protein
STRINGXP_006433144.11e-162(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1273824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-28ERF family protein