PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003967m
Common NameCICLE_v10003967mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 114aa    MW: 12977.8 Da    PI: 8.4498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003967mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-1221882083
                     HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
               B3 20 kkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                      + ++e+      g+   s+ l++ede+g++W ++l +r+++ r  ++++GW+ Fv +++ ++gD vvF 
  Ciclev10003967m 21 SNTIDEFflafeAGQ--YSQNLVVEDENGERWPFRLFIRQGPYRkPTISAGWRCFVMSKQAEVGDQVVFI 88
                     333333344434444..4568***************88777766699**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-12493IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00484109IPR003340B3 DNA binding domain
CDDcd100173.33E-134107No hitNo description
Gene3DG3DSA:2.40.330.105.4E-16494IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.0937109IPR003340B3 DNA binding domain
PfamPF023621.6E-83388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEVYSKILTE TDVSTRLAVE SNTIDEFFLA FEAGQYSQNL VVEDENGERW PFRLFIRQGP  60
YRKPTISAGW RCFVMSKQAE VGDQVVFIKE RAGAIGSAFR YKIRVSKTTE AIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H5QHZ11e-77A0A2H5QHZ1_CITUN; Uncharacterized protein (Fragment)
TrEMBLV4SAN51e-77V4SAN5_9ROSI; Uncharacterized protein
STRINGXP_006431363.12e-78(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2053722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-10ARF family protein