PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003973m
Common NameCICLE_v10003973mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 250aa    MW: 27846.6 Da    PI: 6.6289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003973mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-143583355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     ++h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Ciclev10003973m 35 EMHILTERERRKKMRNMFSNLHALLPHL----PPKADKSTIVDEAVKYIKTLQ 83
                     57999**********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.63E-133184No hitNo description
SuperFamilySSF474599.29E-1631100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4693282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-153396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-113583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-93888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.37E-5167221No hitNo description
CDDcd048731.32E-5172211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
METTPAEAEE QARAQVGKKR SGNGKAVSGG ESEHEMHILT ERERRKKMRN MFSNLHALLP  60
HLPPKADKST IVDEAVKYIK TLQHTHQTLE KQKFEKVQGA TTVDHEQSII TSPLEAVIES  120
REAYLADHLG SSVPKNLSMA ANIHHSLQVP SDCFQTWFSP NVVVNMCGDD AQISVCSPRK  180
PGLLTTIFYI LEKHNLDVVS AHVSSDRYRS MYMIHAHAGE ASDQFPESIS VEEMFKLAVG  240
EMNLWLLTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384271.10.0transcription factor bHLH95-like
TrEMBLV4V7990.0V4V799_9ROSI; Uncharacterized protein
STRINGXP_006434734.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-41bHLH family protein