PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004050m

Common Name

CICLE_v10004050mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ZF-HD

Protein Properties

Length: 210aa MW: 23933.1 Da PI: 8.9417

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004050m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.2	4.5e-29	22	72	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++YkeC+kNhAas+Ggha DGC+Efmp ++l+CaACgCHRnFHRrev Ciclev10004050m 22 FNYKECMKNHAASIGGHANDGCCEFMPR-----ADDSLTCAACGCHRNFHRREVRG 72 68***********************9.....3479*************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-16	22	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.0E-25	23	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.4E-24	23	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.187	24	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.32E-18	120	188	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-29	125	190	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-26	130	186	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MDLSLVPYKH QRPHPQQEPN IFNYKECMKN HAASIGGHAN DGCCEFMPRA DDSLTCAACG 60 CHRNFHRREV RGQLLPQPKR LLLFKDPTKL VGAVDRYDEY DRRSETPERE EVNLNVCPPG 120 NVGPATGKSK RQRTKFTQEQ KDKMLEFAER IGWRMQRQDD VALNQFCNEV GVKRHVLKVW 180 MHNNKNASHR RKDESASQSP TEAAPPAAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-26	129	187	17	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	132	KSKRQR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434579.1	1e-158	zinc-finger homeodomain protein 1
Swissprot	Q9SB61	6e-49	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	V4V6X6	1e-157	V4V6X6_9ROSI; Uncharacterized protein
STRING	XP_006434579.1	1e-157	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21103	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-51	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Ciclev10004050m
Entrez Gene	18041062

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]