PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004234m
Common NameCICLE_v10004234mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 1018aa    MW: 112804 Da    PI: 7.5552
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004234mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.9e-55201363118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++fq
  Ciclev10004234m  20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNENFQ 113
                      55599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+L+ +le+ivlvhy+evk
  Ciclev10004234m 114 RRSYWMLDGQLEHIVLVHYREVK 136
                      ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.85715141IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038594.2E-4921134IPR005559CG-1 DNA-binding domain
CDDcd001020.00191440528No hitNo description
Gene3DG3DSA:2.60.40.103.0E-6441530IPR013783Immunoglobulin-like fold
PfamPF018331.1E-6441526IPR002909IPT domain
SuperFamilySSF812962.96E-17441527IPR014756Immunoglobulin E-set
SuperFamilySSF484031.26E-17608739IPR020683Ankyrin repeat-containing domain
CDDcd002042.65E-14633736No hitNo description
Gene3DG3DSA:1.25.40.205.3E-17633749IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.582635748IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.885677709IPR002110Ankyrin repeat
SMARTSM002480.015677706IPR002110Ankyrin repeat
SMARTSM00248450716745IPR002110Ankyrin repeat
SuperFamilySSF525407.97E-9843902IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000157.7851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.572852881IPR000048IQ motif, EF-hand binding site
PfamPF006120.012855872IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.597875903IPR000048IQ motif, EF-hand binding site
PfamPF006121.6E-4879896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGYK SGRSAADPGS QIESSQTSSA RSLAQANSSA PAAQTSHASI  180
PNKIDWNGQA VSSEFEDVDS GHGSGTPSVA QSIYGSMSQN ASLVAASIAG LPELSRHPQW  240
FAGSKINHGS GSSMWPQIDN SSRNATSVLD QHGHQNFYVG QPSGADFITH KLTDARLASD  300
STIANIGTCG ERLITNIDVH AVTTSSQGAS QVLLEHNFNL INNQYQNCPV PEVTVASVSQ  360
AGIKPKEELG ELKKLDSFGR WMDQEIGGDC DDSLMASDSG NYWNTLDAEN DDKEVSSLSH  420
HMQLEMDSLG PSLSQEQLFS IRDFSPDWAY SGAETKVLII GMFLGTKKLS SDTKWGCMFG  480
EIEVPAEVLT DNVIRCQAPS HAAGRVPFYI TGSNRLACSE VREFEYREKP SKAGYPVASK  540
IAPEDEVRLQ TRLAKFLYLD PERKWFDCTI EDCNKCKLKN TIYSMRGDSE KDWGRVDESP  600
MAIEGDCPNS RDKLIQNLLR NRLCEWLVWK IHEGGKGPNV IDDGGQGVVH LAAALGYEWA  660
MRPIIAAGVS PNFRDARGRT ALHWASYVGR EETVITLVKL GAAPGAVEDP TPAFPGGQTA  720
ADLASSRGHK GIAGYLAEAD LSSHLSSLTV NENGMDNVAA ALAAEKANET AAQIGVQSDG  780
PAAEQLSLRG SLAAVRKSAH AAALIQQAFR VRSFRHRQSI QSSDDVSEVS VDLVALGSLN  840
KVSKMSHFED YLHFAAIKIQ QKYRGWKGRK DFLKMRNHIV KLQAHVRGHQ VRKQYKKVVW  900
SVSIVEKAIL RWRRRGSGLR GFRVGNSTAN VASENEKTDE YEFLRIGRKQ KFAGVEKALE  960
RVKSMVRNPE ARDQYMRMVA KFENFKMCDD GSGLLSQGED SLNGPTKDNL HAYVADQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488760.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_006488761.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_024033801.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_024033834.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLV4RXQ30.0V4RXQ3_9ROSI; Uncharacterized protein
STRINGXP_006488760.10.0(Citrus sinensis)
STRINGXP_006419272.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1