PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004349m
Common NameCICLE_v10004349mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 799aa    MW: 88448.1 Da    PI: 4.8188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004349mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.7e-08735790147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      + +WT+ E+e+l+++v+++ +       Wk+I +        gRt+ ++k++w++ 
  Ciclev10004349m 735 KVPWTAKEEEILKKGVQKFASVddriiPWKKILEFGSsvffGGRTAIDLKDKWRNM 790
                      579****************988**********9987788888************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.09E-11417473IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-9418473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.983424473IPR019787Zinc finger, PHD-finger
SMARTSM002498.5E-9426471IPR001965Zinc finger, PHD-type
PROSITE patternPS013590427470IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.282730791IPR017877Myb-like domain
SuperFamilySSF466891.4E-10732792IPR009057Homeodomain-like
SMARTSM007175.9E-5734793IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-11734792IPR009057Homeodomain-like
CDDcd116604.30E-13736792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MDGLADFSSA GSSLLWLWII EYLASFKEVD TSILHDLIET APEIPDDLAK VTREMVALRC  60
LEDLFGSSDK VNNDGLSCTE NKVGFALSES CEDVLQQILQ ETSASDLNIA GPELLKWDVH  120
PFIMHKRALM PKCALQHLKD TILEGTHPLA ASLKESSGLT CVSECGTARV GDLDHNALAM  180
SEKENLLPST CENRDGQPRD NLHIRNMLPF KRSRGDMATR DMAAHTNGVQ EKCDLNYNAK  240
KHKQDAISNH QSADQISVPT CGKEMVEPLS GRDVAVAGRE GSHFSNQSQD AGLEESQFPD  300
DGCDNCDDLR RLGQNGDVND DQIQHNQAED GHNAARLPRA EPVQNATVDE ANITERVPSV  360
GTQHEDTEDE SRGEVEHSCE EETLSDNDAY HNDRIDVAVK KSHFLSSQAA LGHDSLATSG  420
WTEQNLCVKC NKDGQLLSCS SSTCPLAVHE NCLGFPVKFD EKGNFHCPFC AYTLSISEYL  480
EAKKRASVAR KELAAFMQMG SVCHQMDLAN KLHSKDPGHS GSNGDKDIHE NGNVGEQENN  540
QENQNGQHLR DVSDQLCQKH RAKKKKAEPL HDVSDPLCQR HSANKKKAET SASCVNANSP  600
CREEEANAFS GRDCISNGDK VVEENMDNYC PSERGLEGQP ERTPPECGKL ACTNTYVEPM  660
DDTEAEAELQ KEDVQPASSE SSDPPESPVI ALNIDEEEIS ESEDDKFIIS NYSIRFRRPK  720
THYTYPPIPQ LRRKKVPWTA KEEEILKKGV QKFASVDDRI IPWKKILEFG SSVFFGGRTA  780
IDLKDKWRNM CKGSPRSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421445.10.0uncharacterized protein LOC18031662 isoform X1
RefseqXP_024037365.10.0uncharacterized protein LOC18031662 isoform X1
TrEMBLV4S7920.0V4S792_9ROSI; Uncharacterized protein
STRINGXP_006421445.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1434755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-07MYB_related family protein